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Text mining system for plant model organism: Arabidopsis
Dear all,
We have implemented an automatic text mining system for Arabidopsis thaliana called PLAN2L. The aim behind this system is to enable a more efficient retrieval and extraction of relevant information for genes and proteins in terms of their association to certain biological processes (cell cycle, flowering, seed development, root development and leaf development) as well some additional information such as regulatory associations, protein interaction and sub-cellular location. We would be pleased if you try out the system and provide us with some feedback to improve the current version based on your input. The system is free, open to all users with no need to register and it is not commercial. You can have a look at it at: http://zope.bioinfo.cnio.es/plan2l/plan2l.html There are some modules for instance related to full text processing, query types or functional annotation extraction (using GO) that we would like to add depending on users interest. As we are actually working at a cancer research center where I have limited access to experts working on several biological processes using Arabidopsis as a model organism, I really would appreciate all feedback to make or system practically useful to a broader community. Best regards, Martin Krallinger ------------------------------------------------------------- Martin Krallinger Structural Biology and Biocomputing Group, Spanish National Cancer Research Center (CNIO) E-28029 Madrid, Spain Tel.: +(34)917 328 000 Fax: +(34)912 246 980 e-mail: -------------------------------------------------- **NOTA DE CONFIDENCIALIDAD** Este correo electrónico, y en su caso los ficheros adjuntos, pueden contener información protegida para el uso exclusivo de su destinatario. Se prohíbe la distribución, reproducción o cualquier otro tipo de transmisión por parte de otra persona que no sea el destinatario. Si usted recibe por error este correo, se ruega comunicarlo al remitente y borrar el mensaje recibido. **CONFIDENTIALITY NOTICE** This email communication and any attachments may contain confidential and privileged information for the sole use of the designated recipient named above. Distribution, reproduction or any other use of this transmission by any party other than the intended recipient is prohibited. If you are not the intended recipient please contact the sender and delete all copies. |
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